ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR156
source: PMRD, original name: osa-miR156d
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCAC miRNA* GCTCACTCCTCTTTCTGTCACC mismatches: 0 bulges: 2 |
pre-miRNA
GGAGAAGCTCTCATGAGATTGACAGAAGAGAGTGAGCACACGGCGTGATGGCCGGCATAAAATCTATCCCGTCCTCGCCGCGTGCTCACTCCTCTTTCTG
TCACCCTCTTTCTCTCAGGGCTCAACTCC
dot-bracket secondary structure
((((.((((((...((((.((((((((((((((((((((.(((((....((.(((.(((.....))).))).)).))))).))))))))).))).)))))
))).......))))..))))))...))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
GGAGAAGCTCTCATGAGATTGACAGAAGAGAGTGAGCACACGGCGTGATGGCCGGCATAAAATCTATCCCGTCCTCGCCGCGTGCTCACTCCTCTTTCTG
TCACCCTCTTTCTCTCAGGGCTCAACTCC
dot-bracket secondary structure
((((.((((((...((((.((((((((((((((((((((.(((((....((.(((.(((.....))).))).)).))))).))))))))).))).)))))
))).......))))..))))))...))))
SIMILARITIES| miRBase osa-MIR156d: 3e-69 PMRD zma-miR156d: 8e-27 microPC miR156: 2e-18 | UniProt no hits RFAM mir-156: 3e-42 |
Identical with: osa-MIR156d from miRBase (MNEST041907) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
