ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR156
source: PMRD, original name: osa-miR156m
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCAC miRNA* GCTCGCTCCTCTTTCTGTCA mismatches: 1 bulges: 2 |
pre-miRNA
TGACAGAAGAGAGTGAGCACACGGCGCGGCGGCTAGCCATCGGCGGGATGCCTGCCCCCGCCGCGTGCTCGCTCCTCTTTCTGTCA
dot-bracket secondary structure
.(((((((((((((((((((.(((((.((.(((.((.((((.....)))).)))))))))))).))))))))).))).))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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deep sequencing data evidence
TGACAGAAGAGAGTGAGCACACGGCGCGGCGGCTAGCCATCGGCGGGATGCCTGCCCCCGCCGCGTGCTCGCTCCTCTTTCTGTCA
dot-bracket secondary structure
.(((((((((((((((((((.(((((.((.(((.((.((((.....)))).)))))))))))).))))))))).))).))))))).
SIMILARITIES| miRBase osa-MIR156j: 1e-43 PMRD osa-miR156j: 1e-43 microPC miR156: 4e-40 | UniProt no hits RFAM mir-156: 2e-42 |
Identical with: osa-miR156j from PMRD (MNEST048810) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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deep sequencing data evidence
