ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR156
source: PMRD, original name: osa-miR156n
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCAC miRNA* TCTCCTCTCCCGCCCTCGCGGAAAGTAATGGCGTATTTGCGGCCTTGCCGGTCA mismatches: 8 bulges: 38 |
pre-miRNA
TGACAGAAGAGAGTGAGCACCCTGCGTCGATGTTGCGATCATATCTCCTCTCCCGCCCTCGCGGAAAGTAATGGCGTATTTGCGGCCTTGCCGGTCA
dot-bracket secondary structure
.(((....(((((.(((.....((.((((......))))))...))))))))((((....))))...((((.(((((....)).)))))))..))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: not a miRNA
download this record
deep sequencing data evidence
TGACAGAAGAGAGTGAGCACCCTGCGTCGATGTTGCGATCATATCTCCTCTCCCGCCCTCGCGGAAAGTAATGGCGTATTTGCGGCCTTGCCGGTCA
dot-bracket secondary structure
.(((....(((((.(((.....((.((((......))))))...))))))))((((....))))...((((.(((((....)).)))))))..))).
SIMILARITIES| miRBase zma-MIR156l: 0.0003 PMRD zma-miR156o: 0.0003 microPC miR156: 0.00002 | UniProt no hits RFAM mir-156: 0.0003 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: not a miRNA
download this record
deep sequencing data evidence
