ABOUT THIS RECORDspecies: Oryza sativa
source: PMRD, original name: osa-miR156p
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCTC miRNA* GTTTTTACTCGTTTTTCTCGAT mismatches: 2 bulges: 2 |
pre-miRNA
GAGTTTTTACTCGTTTTTCTCGATTTCTCGATTTCGATGACTCGGAACTAAATAGGTTCTCTAATGACAAGTAAGAGCAAGAAATTTCTAGCACGGAGAA
GCTCTCATGAGATTGACAGAAGAGAGTGAGCTC
dot-bracket secondary structure
((((..((((((.(((((.((((((((....((((((....))))))......((.((((((.....(......).((.(((....))).))..))))))
.)).....)))))))).))))).))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: not a miRNA
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GAGTTTTTACTCGTTTTTCTCGATTTCTCGATTTCGATGACTCGGAACTAAATAGGTTCTCTAATGACAAGTAAGAGCAAGAAATTTCTAGCACGGAGAA
GCTCTCATGAGATTGACAGAAGAGAGTGAGCTC
dot-bracket secondary structure
((((..((((((.(((((.((((((((....((((((....))))))......((.((((((.....(......).((.(((....))).))..))))))
.)).....)))))))).))))).))))))))))
SIMILARITIES| miRBase osa-MIR156d: 0.00000000000003 PMRD osa-miR156o: 2e-70 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: not a miRNA
download this record
