ABOUT THIS RECORDspecies: Oryza sativa
source: PMRD, original name: osa-miR156r
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGAGAGCAC miRNA* GCTCCATCTAGTTTTGAAGCA mismatches: 6 bulges: 1 |
pre-miRNA
TGACAGAAGAGAGAGAGCACGCTGAACATCTAGTGCTCCATCTAGTTTTGAAGCAGTTTCAGATGCATCTGCACCTTTTATTG
dot-bracket secondary structure
...(((((.(((..((((((...(.....)..))))))..)))..)))))..((((...(....)...))))...........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: not a miRNA
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deep sequencing data evidence
TGACAGAAGAGAGAGAGCACGCTGAACATCTAGTGCTCCATCTAGTTTTGAAGCAGTTTCAGATGCATCTGCACCTTTTATTG
dot-bracket secondary structure
...(((((.(((..((((((...(.....)..))))))..)))..)))))..((((...(....)...))))...........
SIMILARITIES| miRBase zma-MIR156j: 0.0002 PMRD tae-miR156b: 0.000000000000001 microPC miR157: 0.0002 | UniProt sp|Q653Z5|SPL11_ORYSJ: 0.0000009 RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: not a miRNA
download this record
deep sequencing data evidence
