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ABOUT THIS RECORD
ID:
MNEST048821
species:
Oryza sativa
miRNA family:
MIR159
source:
PMRD, original name:
osa-miR159c
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATTGGATTGAAGGGAGCTCCA
miRNA*
GAGCTCCTTTCGATCCAATTC
mismatches:
1
bulges:
0
View larger
pre-miRNA
GAGGAGGAAGAG
GAGCTCCTTTCGATCCAATTC
AGGAGAGGAAGTGGTAGGATGCAGCTGCCGATTCATGGATACCTCTGGAGTGCATGGCAGCAATGCT
GTAGGCCTGCACTTGCATGGGTTTGCATGACCCGGGAGATGAACCCACCATTGTCTTCCTCTATTG
ATTGGATTGAAGGGAGCTCCA
CATCTCTCTC
dot-bracket secondary structure
(((..(((.(.(
(((((((((((((((((((.(
((.((((((((((((.((...((.((.(((..(((((.(.((((.(((((((((.(((.(((....)
))..)))))))))).)).)))).).)))))..))).)).))..)).))))....)))))))).)))
)))))))))))))))))))).
).)))..)))
SIMILARITIES
miRBase
osa-MIR159c
:
1e-109
PMRD
osa-miR159f
:
3e-58
microPC
miR319
:
8e-22
UniProt
no hits
RFAM
MIR159: 3e-108
Identical with:
osa-MIR159c
from miRBase (
MNEST041919
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Jones-Rhoades MW, Bartel DP,
Mol Cell. 14:787-799(2004).
,
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"