ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR160
source: PMRD, original name: osa-miR160a
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCGTGCAAGGAGCCAAGCATG mismatches: 2 bulges: 0 |
pre-miRNA
GTGTGCCTGGCTCCCTGTATGCCACACATGTAGACCAACCCATGGTGTCTGGTTGCCTACTGGGTGGCGTGCAAGGAGCCAAGCATGC
dot-bracket secondary structure
((((((.(((((((.((((((((((.((.((((..(((((..........))))).)))))).)))))))))).))))))).))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
GTGTGCCTGGCTCCCTGTATGCCACACATGTAGACCAACCCATGGTGTCTGGTTGCCTACTGGGTGGCGTGCAAGGAGCCAAGCATGC
dot-bracket secondary structure
((((((.(((((((.((((((((((.((.((((..(((((..........))))).)))))).)))))))))).))))))).))))))
SIMILARITIES| miRBase osa-MIR160a: 7e-45 PMRD osa-miR160b: 0.000000000000005 microPC miR160: 0.00000000000002 | UniProt no hits RFAM mir-160: 1e-43 |
Identical with: osa-MIR160a from miRBase (MNEST041923) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
