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ABOUT THIS RECORD
ID:
MNEST048832
species:
Oryza sativa
miRNA family:
MIR160
source:
PMRD, original name:
osa-miR160m
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGCCTGGCTCCCTGTATGCCA
miRNA*
GCGTGCAAGGAGCCAAGCA
mismatches:
3
bulges:
0
View larger
pre-miRNA
TGCCTGGCTCCCTGTATGCCA
CTCATGTAGCCCAATCCATGGTGTGTTTGGATGCTGTGGGTG
GCGTGCAAGGAGCCAAGCA
dot-bracket secondary structure
.((.(((((((.(((((((((
(((((..(((...(((((.........)))))))))))))))
))))))).))))))).)).
SIMILARITIES
miRBase
osa-MIR160b
:
2e-41
PMRD
osa-miR160b
:
2e-41
microPC
miR160
:
6e-39
UniProt
no hits
RFAM
mir-160: 4e-40
Identical with:
osa-MIR160b
from miRBase (
MNEST041924
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
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deep sequencing data evidence