ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR160
source: PMRD, original name: osa-miR160n
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCGTGCGAGGAGCCAAGCAT mismatches: 2 bulges: 0 |
pre-miRNA
TGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAAACTCAGTTGAAACAACTGCCTTCTCCCGGCGAGATTCAGGCATTGTGTTCGTACGTTTGGCTC
TACTGCGGATGGCGTGCGAGGAGCCAAGCAT
dot-bracket secondary structure
(((.(((((((.(((((((((..(((((((..(((((((.....((((((((.(((((((((.....))))...))))))))).))))...))))))).)
))).)))..))))))))).))))))).))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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deep sequencing data evidence
TGCCTGGCTCCCTGTATGCCACTCGCGTAGCTGCCAAACTCAGTTGAAACAACTGCCTTCTCCCGGCGAGATTCAGGCATTGTGTTCGTACGTTTGGCTC
TACTGCGGATGGCGTGCGAGGAGCCAAGCAT
dot-bracket secondary structure
(((.(((((((.(((((((((..(((((((..(((((((.....((((((((.(((((((((.....))))...))))))))).))))...))))))).)
))).)))..))))))))).))))))).))).
SIMILARITIES| miRBase osa-MIR160d: 2e-70 PMRD osa-miR160d: 2e-70 microPC miR160: 9e-70 | UniProt no hits RFAM mir-160: 4e-69 |
Identical with: miR160 from microPC (MNEST045467) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
deep sequencing data evidence
