ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR166
source: PMRD, original name: osa-miR166d
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGTTGTCTGGCTCGAGG mismatches: 4 bulges: 0 |
pre-miRNA
GAAGCTTTTTCACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGG
CTTCATTCCCCTCAAGTAAAGCTCC
dot-bracket secondary structure
..((((((...((((.((((((((((..((((((..((((((.((.((((....))))((((((......)))))).........))))))))..)))))
)..))))))))))))))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
GAAGCTTTTTCACTTTGAGGGGAATGTTGTCTGGCTCGAGGTGCATGGAGAAACCTCTGATCGATCAGGTTTGATCTGTAGAGACTGATCTCGGACCAGG
CTTCATTCCCCTCAAGTAAAGCTCC
dot-bracket secondary structure
..((((((...((((.((((((((((..((((((..((((((.((.((((....))))((((((......)))))).........))))))))..)))))
)..))))))))))))))))))))..
SIMILARITIES| miRBase osa-MIR166d: 8e-67 PMRD zma-miR166p: 0.0000000001 microPC miR166: 7e-49 | UniProt no hits RFAM mir-166: 2e-52 |
Identical with: miR166 from microPC (MNEST046452) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
