ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR166
source: PMRD, original name: osa-miR166e
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGAACCAGGCTTCATTCCCC miRNA* GGAATGTTGTCTGGTTCAAGG mismatches: 4 bulges: 0 |
pre-miRNA
TGTTTCTGGGTGGAATGTTGTCTGGTTCAAGGCCCCTTAGGATGTGTGATTTTTGATGGTTTATGCATTCATCTTGATGCGAACATCTATCTCGGATCTT
TGGGTTCTCGAACCAGGCTTCATTCCCCTCAGAGATA
dot-bracket secondary structure
((((((((((.((((((..(((((((((.((..(((..(((((.((.(((....((((.....((((((......))))))..)))).))).)).)))))
.)))..)).)))))))))..)))))).))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
TGTTTCTGGGTGGAATGTTGTCTGGTTCAAGGCCCCTTAGGATGTGTGATTTTTGATGGTTTATGCATTCATCTTGATGCGAACATCTATCTCGGATCTT
TGGGTTCTCGAACCAGGCTTCATTCCCCTCAGAGATA
dot-bracket secondary structure
((((((((((.((((((..(((((((((.((..(((..(((((.((.(((....((((.....((((((......))))))..)))).))).)).)))))
.)))..)).)))))))))..)))))).))))))))))
SIMILARITIES| miRBase osa-MIR166e: 6e-74 PMRD osa-miR166a: 0.000000002 microPC miR166: 0.0001 | UniProt no hits RFAM mir-166: 7e-68 |
Identical with: osa-MIR166e from miRBase (MNEST041941) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
