ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR166
source: PMRD, original name: osa-miR166h
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCTC miRNA* GGAATGTTGGCTGGCTCGAGG mismatches: 5 bulges: 0 |
pre-miRNA
TGGTGGCTTGTGGGGAATGTTGGCTGGCTCGAGGTATCCACATCTTAATTCCTCTCCGGCGATCGAGCCGGCTCGGGCGTGTGGAAGCGTCGGACCAGGCT
TCATTCCTCGCAAGCCGAT
dot-bracket secondary structure
)..((((((((((((((((..(.((((..(((.((.(((((((......(((...(((((......)))))...))).))))))).)).)))..)))).).
.))))))))))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
TGGTGGCTTGTGGGGAATGTTGGCTGGCTCGAGGTATCCACATCTTAATTCCTCTCCGGCGATCGAGCCGGCTCGGGCGTGTGGAAGCGTCGGACCAGGCT
TCATTCCTCGCAAGCCGAT
dot-bracket secondary structure
)..((((((((((((((((..(.((((..(((.((.(((((((......(((...(((((......)))))...))).))))))).)).)))..)))).).
.))))))))))))))))..
SIMILARITIES| miRBase osa-MIR166h: 3.0E-63 PMRD zma-miR166m: 6.0E-9 microPC miR166: 6.0E-6 | UniProt no hits RFAM 6mir-166: 5.0E-56 |
Identical with: osa-MIR166h from miRBase (MNEST041944) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
