ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR166
source: PMRD, original name: osa-miR166k
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCAATCCCT miRNA* GGTTTGTTGTCTGGCTCGAGG mismatches: 5 bulges: 0 |
pre-miRNA
ATTAGGTTAAGGGGTTTGTTGTCTGGCTCGAGGCATCCGGGACTCCGGTTTCTCCTTTCCTACTGGAGGCGCCTAATTTCCGGCGAGCTCGGAGCCTCGG
ACCAGGCTTCAATCCCTTTAACCATGC
dot-bracket secondary structure
....((((((((((.(((..((((((..((((((.((((((.(((((((............))))))).((((........))))..)))))))))))).
.))))))..))).))))))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
ATTAGGTTAAGGGGTTTGTTGTCTGGCTCGAGGCATCCGGGACTCCGGTTTCTCCTTTCCTACTGGAGGCGCCTAATTTCCGGCGAGCTCGGAGCCTCGG
ACCAGGCTTCAATCCCTTTAACCATGC
dot-bracket secondary structure
....((((((((((.(((..((((((..((((((.((((((.(((((((............))))))).((((........))))..)))))))))))).
.))))))..))).))))))))))....
SIMILARITIES| miRBase osa-MIR166k: 5e-68 PMRD sbi-miR166g: 0.0000000001 microPC miR166: 0.00002 | UniProt no hits RFAM mir-166: 9e-61 |
Identical with: osa-MIR166k from miRBase (MNEST041947) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
