ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR166
source: PMRD, original name: osa-miR166m
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCT miRNA* GGTTTGTTGTCTGGTTCAAGG mismatches: 5 bulges: 0 |
pre-miRNA
CTCTGCTTTGGTGGTTGGCTGATGTTCTCGGTTAAGGGGTTTGTTGTCTGGTTCAAGGCCTCCTGCTGTCCTACATCACATTTTTTTTTCTTTGTTCTGA
ATTTCTGATGGATGTGTGTGTGCATGATGCATGGCTGGTGGTGACCTCGGACCAGGCTTCATTCCCTTTAACCAGCATTTGCGTTAATACCATCAGGCAT
dot-bracket secondary structure
...(((((.((((((..((.((((((...((((((((((..((..(((((((((.(((((.((.(((....((((((.((((.....(((........))
).....))))))))))...((((.....))))))).)).))...))).)))))))))..))..)))))))))))))))).))......))))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Li Y, Li W, Jin YX, Acta Biochim Biophys Sin (Shanghai). 37:75-87(2005)., "Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa"
CTCTGCTTTGGTGGTTGGCTGATGTTCTCGGTTAAGGGGTTTGTTGTCTGGTTCAAGGCCTCCTGCTGTCCTACATCACATTTTTTTTTCTTTGTTCTGA
ATTTCTGATGGATGTGTGTGTGCATGATGCATGGCTGGTGGTGACCTCGGACCAGGCTTCATTCCCTTTAACCAGCATTTGCGTTAATACCATCAGGCAT
dot-bracket secondary structure
...(((((.((((((..((.((((((...((((((((((..((..(((((((((.(((((.((.(((....((((((.((((.....(((........))
).....))))))))))...((((.....))))))).)).))...))).)))))))))..))..)))))))))))))))).))......))))))))))).
SIMILARITIES| miRBase osa-MIR166m: 3e-95 PMRD osa-miR166l: 0.0000000002 microPC miR166: 0.00004 | UniProt no hits RFAM mir-166: 2e-59 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Li Y, Li W, Jin YX, Acta Biochim Biophys Sin (Shanghai). 37:75-87(2005)., "Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa"
