ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR167
source: PMRD, original name: osa-miR167c
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GGTCATGCTGCGGCAGCCTCACT mismatches: 1 bulges: 2 |
pre-miRNA
TGTCCAAGGGAACGAGTGAAGCTGCCAGCATGATCTAGCTCTGAATGATCAACAAGATGTGCTCCCACACTGCCTTCCTGTGGATCTTGAGCTGTTGCTA
GTCTTGTGGTCATGCCTTGCTAGGTCATGCTGCGGCAGCCTCACTTCTTCCCATTGTTGGGCA
dot-bracket secondary structure
.(((((((((((.((((((.(((((((((((((((((((.....(((((((.((((((..(((((((((.........))))).....))))........
))))))))))))).....)))))))))))))..)))))).)))))).)))))....)))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
TGTCCAAGGGAACGAGTGAAGCTGCCAGCATGATCTAGCTCTGAATGATCAACAAGATGTGCTCCCACACTGCCTTCCTGTGGATCTTGAGCTGTTGCTA
GTCTTGTGGTCATGCCTTGCTAGGTCATGCTGCGGCAGCCTCACTTCTTCCCATTGTTGGGCA
dot-bracket secondary structure
.(((((((((((.((((((.(((((((((((((((((((.....(((((((.((((((..(((((((((.........))))).....))))........
))))))))))))).....)))))))))))))..)))))).)))))).)))))....)))))).
SIMILARITIES| miRBase osa-MIR167c: 2e-89 PMRD zma-miR167d: 2e-19 microPC miR167: 0.000002 | UniProt no hits RFAM MIR167_1: 2e-81 |
Identical with: osa-MIR167c from miRBase (MNEST041953) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP, Genes Dev. 16:1616-1626(2002)., "MicroRNAs in plants"
