ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR167
source: PMRD, original name: osa-miR167g
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* GATCATCCGGCAGCTTCATC mismatches: 1 bulges: 1 |
pre-miRNA
CATAAGCAGGTGAAGCTGCCAGCATGATCTGAAAGCATCTCAAACCAGCGATCAGATCATCCGGCAGCTTCATCTTCTCATG
dot-bracket secondary structure
(((.((.(((((((((((((.(.(((((((((..((...........))..)))))))))).))))))))))))).)).)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
CATAAGCAGGTGAAGCTGCCAGCATGATCTGAAAGCATCTCAAACCAGCGATCAGATCATCCGGCAGCTTCATCTTCTCATG
dot-bracket secondary structure
(((.((.(((((((((((((.(.(((((((((..((...........))..)))))))))).))))))))))))).)).)))
SIMILARITIES| miRBase osa-MIR167g: 2e-41 PMRD osa-miRf10478-akr: 2e-41 microPC miR167: 2e-29 | UniProt no hits RFAM MIR167_1: 4e-40 |
Identical with: miR167 from microPC (MNEST045345) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
