ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR169
source: PMRD, original name: osa-miR169b
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGG miRNA* GGCAAGTTGTCCTTGGCTACG mismatches: 3 bulges: 0 |
pre-miRNA
GAACGGAATGCAGCCAAGGATGACTTGCCGGTACGTGTATGCATGTTTCAAGGTACTATATGTGCCCCCAACTGTTTTAGATCCATGCTGACATTTTCCG
GCAAGTTGTCCTTGGCTACGTCTTGTTC
dot-bracket secondary structure
(((((..(((.(((((((((..(((((((((...((((..(((((..((..(((((.....)))))..(....).....))..)))))..))))...)))
))))))..))))))))).)))..)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
GAACGGAATGCAGCCAAGGATGACTTGCCGGTACGTGTATGCATGTTTCAAGGTACTATATGTGCCCCCAACTGTTTTAGATCCATGCTGACATTTTCCG
GCAAGTTGTCCTTGGCTACGTCTTGTTC
dot-bracket secondary structure
(((((..(((.(((((((((..(((((((((...((((..(((((..((..(((((.....)))))..(....).....))..)))))..))))...)))
))))))..))))))))).)))..)))))
SIMILARITIES| miRBase osa-MIR169b: 1e-68 PMRD zma-miR169c: 0.00000003 microPC miR169: 5e-56 | UniProt no hits RFAM MIR169_2: 2e-67 |
Identical with: miR169 from microPC (MNEST045343) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
