ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR169
source: PMRD, original name: osa-miR169o
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGAATGACTTGCCTA miRNA* GGCCGGTCTTCTTGGCTAGCC mismatches: 1 bulges: 2 |
pre-miRNA
CTCCCTTTGGTAGCCAAGAATGACTTGCCTACGCTTTTGCCCTCTGTTGGCTCATCCATCCGTCTATCTATCTGCCATGGCAGATGGCAGATTAAGGGTT
TCTGAAAGAAATTCTTGTGATAGGATGTGCAATGAGGCTGCATGGGCCGGTCTTCTTGGCTAGCCAGAGTGGC
dot-bracket secondary structure
..((((((((((((((((((.((((.(((((.((....(((.((.....((.((((((((.((((..((((((((....)))))))).))))((((((((
((.....)))))))))).))).))))).))...))))).)).))))).))))))))))))).))))))).)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
CTCCCTTTGGTAGCCAAGAATGACTTGCCTACGCTTTTGCCCTCTGTTGGCTCATCCATCCGTCTATCTATCTGCCATGGCAGATGGCAGATTAAGGGTT
TCTGAAAGAAATTCTTGTGATAGGATGTGCAATGAGGCTGCATGGGCCGGTCTTCTTGGCTAGCCAGAGTGGC
dot-bracket secondary structure
..((((((((((((((((((.((((.(((((.((....(((.((.....((.((((((((.((((..((((((((....)))))))).))))((((((((
((.....)))))))))).))).))))).))...))))).)).))))).))))))))))))).))))))).)).
SIMILARITIES| miRBase osa-MIR169o: 3e-95 PMRD osa-miR169n: 3e-39 microPC no hits | UniProt no hits RFAM MIR169_5: 5e-94 |
Identical with: osa-MIR169o from miRBase (MNEST041978) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
