ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR319
source: PMRD, original name: osa-miR319b
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGACTGAAGGGTGCTCCC miRNA* AGAGCGTCCTTCAGTCCACTC mismatches: 4 bulges: 1 |
pre-miRNA
GATGGATGGAAGAGAGCGTCCTTCAGTCCACTCATGGGCGGTGCTAGGGTCGAATTAGCTGCCGACTCATTCACCCACATGCCAAGCAAGAAACGCTTGA
GATAGCGAAGCTTAGCAGATGAGTGAATGAAGCGGGAGGTAACGTTCCGATCTCGCGCCGTCTTTGCTTGGACTGAAGGGTGCTCCCTCCTCCTCGA
dot-bracket secondary structure
((.(((.(((.(.((((..(((((((((((..((.(((((((((..(((((((((((.((.(((..((((((((.((..(((.((((......((((...
...))))..)))).)))..)).))))))))..))).)).))..))).)))))).))))))))).))..)))))))))))..))))).))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
GATGGATGGAAGAGAGCGTCCTTCAGTCCACTCATGGGCGGTGCTAGGGTCGAATTAGCTGCCGACTCATTCACCCACATGCCAAGCAAGAAACGCTTGA
GATAGCGAAGCTTAGCAGATGAGTGAATGAAGCGGGAGGTAACGTTCCGATCTCGCGCCGTCTTTGCTTGGACTGAAGGGTGCTCCCTCCTCCTCGA
dot-bracket secondary structure
((.(((.(((.(.((((..(((((((((((..((.(((((((((..(((((((((((.((.(((..((((((((.((..(((.((((......((((...
...))))..)))).)))..)).))))))))..))).)).))..))).)))))).))))))))).))..)))))))))))..))))).))))))))..
SIMILARITIES| miRBase osa-MIR319b: 1e-109 PMRD zma-miR319b: 3e-55 microPC miR319: 3e-95 | UniProt no hits RFAM MIR159: 1e-107 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Jones-Rhoades MW, Bartel DP, Mol Cell. 14:787-799(2004)., "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
