ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR396
source: PMRD, original name: osa-miR396d
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCACAGGCTTTCTTGAACTG miRNA* GAAAAGAAAGCTGAATTGTCGA mismatches: 9 bulges: 2 |
pre-miRNA
AAAGATGTGCGGGCATGCTTTCCACAGGCTTTCTTGAACTGTGAACTCGTGGGGGTGTATGTGCTCATGTTGGGATTGTGGTCGGTGGCCTCCAATTCTC
TGAAAAGAAAGCTGAATTGTCGAGCTCCCCGTTCTGTCTTTG
dot-bracket secondary structure
((((((..(((((...((((..((..(((((((((.....(.(((....(((((((...((.((.((((.......))))))))...))))))).))).)
....)))))))))....))..))))..)))))...)))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Sunkar R, Girke T, Jain PK, Zhu JK, Plant Cell. 17:1397-1411(2005)., "Cloning and characterization of microRNAs from rice"
AAAGATGTGCGGGCATGCTTTCCACAGGCTTTCTTGAACTGTGAACTCGTGGGGGTGTATGTGCTCATGTTGGGATTGTGGTCGGTGGCCTCCAATTCTC
TGAAAAGAAAGCTGAATTGTCGAGCTCCCCGTTCTGTCTTTG
dot-bracket secondary structure
((((((..(((((...((((..((..(((((((((.....(.(((....(((((((...((.((.((((.......))))))))...))))))).))).)
....)))))))))....))..))))..)))))...)))))).
SIMILARITIES| miRBase osa-MIR396d: 7e-77 PMRD osa-miR396e: 4e-72 microPC miR396: 0.0000000001 | UniProt no hits RFAM MIR396: 1e-69 |
Identical with: osa-MIR396d from miRBase (MNEST042029) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Sunkar R, Girke T, Jain PK, Zhu JK, Plant Cell. 17:1397-1411(2005)., "Cloning and characterization of microRNAs from rice"
