ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR827
source: PMRD, original name: osa-miR827a
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAGATGACCATCAGCAAACA miRNA* TTTGTTGCTGGTCATCTAGCT mismatches: 3 bulges: 0 |
pre-miRNA
TTTTGTTGCTGGTCATCTAGCTACCCGTGCATGCCTGGAGATTGGAGAATAATTGACGATGCAGCAGTCGGCTTATTGGCTCTTGGGCACGCGTGGTTAG
ATGACCATCAGCAAACA
dot-bracket secondary structure
.(((((((.(((((((((((((((.(((((...((.((((....(((.........((((......)))).))).....)))).))))))).))))))))
))))))).)))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Lacombe S, Nagasaki H, Santi C, Duval D, Piegu B, Bangratz M, Breitler JC, Guiderdoni E, Brugidou C, Hirsch J, Cao X, Brice C, Panaud O, Karlowski WM, Sato Y, Echeverria M, BMC Plant Biol. 8:123(2008)., "Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice"
TTTTGTTGCTGGTCATCTAGCTACCCGTGCATGCCTGGAGATTGGAGAATAATTGACGATGCAGCAGTCGGCTTATTGGCTCTTGGGCACGCGTGGTTAG
ATGACCATCAGCAAACA
dot-bracket secondary structure
.(((((((.(((((((((((((((.(((((...((.((((....(((.........((((......)))).))).....)))).))))))).))))))))
))))))).)))))))..
SIMILARITIES| miRBase osa-MIR827b: 5e-62 PMRD osa-miR827b: 5e-62 microPC miR827: 0.000006 | UniProt no hits RFAM no hits |
Identical with: osa-miRf10281-akr from PMRD (MNEST049496) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Lacombe S, Nagasaki H, Santi C, Duval D, Piegu B, Bangratz M, Breitler JC, Guiderdoni E, Brugidou C, Hirsch J, Cao X, Brice C, Panaud O, Karlowski WM, Sato Y, Echeverria M, BMC Plant Biol. 8:123(2008)., "Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice"
