ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR1428
source: PMRD, original name: osa-miR1428f
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AATTCACAGGCCCTATCTTGTG miRNA* TAAGATAATGCCGTGAATTCG mismatches: 2 bulges: 1 |
pre-miRNA
TGCTTTGCGAATTCACAGGCCCTATCTTGTGGTATGAACTAAGTACGCGATGATTTCTGGTACGTATTGGGGGCTTACCATAAGATAATGCCGTGAATTC
GTAAAGCGT
dot-bracket secondary structure
.(((((((((((((((.(((..((((((((((((.(..((.((((((....(....).....)))))).))..).))))))))))))..)))))))))))
)))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"
TGCTTTGCGAATTCACAGGCCCTATCTTGTGGTATGAACTAAGTACGCGATGATTTCTGGTACGTATTGGGGGCTTACCATAAGATAATGCCGTGAATTC
GTAAAGCGT
dot-bracket secondary structure
.(((((((((((((((.(((..((((((((((((.(..((.((((((....(....).....)))))).))..).))))))))))))..)))))))))))
)))))))..
SIMILARITIES| miRBase osa-MIR1428f: 3e-57 PMRD osa-miR1428d: 1e-37 microPC miR1428: 1e-25 | UniProt no hits RFAM MIR1428: 3e-29 |
Identical with: osa-MIR1428f from miRBase (MNEST042210) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Xue LJ, Zhang JJ, Xue HW, Nucleic Acids Res. 37:916-930(2009)., "Characterization and expression profiles of miRNAs in rice seeds"
