ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf1548
source: PMRD, original name: osa-miRf11209-akr
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCAGTTTCATCTGCTTGTGG miRNA* ATTAGGAGCTGAAGCTGCCAG mismatches: 4 bulges: 0 |
pre-miRNA
GTGCAACCATTAGGAGCTGAAGCTGCCAGCATGATCTGATGAGTGCTTATTAGGTGAGGGCAGAATTGACTGCCAAAACAAAGATCAGATCATGCTGTGC
AGTTTCATCTGCTTGTGGCTGCAC
dot-bracket secondary structure
(((((.((((.((.((.(((((((((((((((((((((((....(((.....)))...(((((......))))).........)))))))))))))).))
))))))).)).)).)))).)))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GTGCAACCATTAGGAGCTGAAGCTGCCAGCATGATCTGATGAGTGCTTATTAGGTGAGGGCAGAATTGACTGCCAAAACAAAGATCAGATCATGCTGTGC
AGTTTCATCTGCTTGTGGCTGCAC
dot-bracket secondary structure
(((((.((((.((.((.(((((((((((((((((((((((....(((.....)))...(((((......))))).........)))))))))))))).))
))))))).)).)).)))).)))))
SIMILARITIES| miRBase osa-MIR167d: 7e-58 PMRD osa-miRf11210-akr: 5e-59 microPC miR167: 0.0000004 | UniProt no hits RFAM MIR167_1: 1e-59 |
Identical with: osa-miR167n from PMRD (MNEST048870) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
