ABOUT THIS RECORDspecies: Oryza sativa
source: PMRD, original name: osa-miRf11544-akr
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATCTGTGACGGGCCACAACT miRNA* TTGTGGCCCATCACTTATAGGTGTC mismatches: 1 bulges: 4 |
pre-miRNA
GATGGTCATCTGTGACGGGCCACAACTTTAGGCCCATTTGAGATATGGAATGTTATCTTAATCGGGCCTAAAGTTGTGGCCCATCACTTATAGGTGTCAT
C
dot-bracket secondary structure
(((((.(((((((((.(((((((((((((((((((..((((((((........))))))))..))))))))))))))))))).))))....)))))))))
)
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GATGGTCATCTGTGACGGGCCACAACTTTAGGCCCATTTGAGATATGGAATGTTATCTTAATCGGGCCTAAAGTTGTGGCCCATCACTTATAGGTGTCAT
C
dot-bracket secondary structure
(((((.(((((((((.(((((((((((((((((((..((((((((........))))))))..))))))))))))))))))).))))....)))))))))
)
SIMILARITIES| miRBase no hits PMRD osa-miRf10667-akr: 2e-23 microPC miR817: 0.000000000000005 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
