ABOUT THIS RECORDspecies: Oryza sativa
source: PMRD, original name: osa-miRf11565-akr
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTCGAACTGCGGTAGTTCGACAGGT miRNA* CCTATCGAACAACCGTGGTTCGATACG mismatches: 5 bulges: 1 |
pre-miRNA
TTTAGCACCCTATCGAACAACCGTGGTTCGATACGGTACCTATCGAACAACCATAGTTCGATAGGGTACTTGTCGAACTGCGGTAGTTCGACAGGTGATT
AAA
dot-bracket secondary structure
.((((((((...((((((.((((..((((((((.((((((((((((((.......)))))))).))))))))))))))..)))).))))))..)))).))
)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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TTTAGCACCCTATCGAACAACCGTGGTTCGATACGGTACCTATCGAACAACCATAGTTCGATAGGGTACTTGTCGAACTGCGGTAGTTCGACAGGTGATT
AAA
dot-bracket secondary structure
.((((((((...((((((.((((..((((((((.((((((((((((((.......)))))))).))))))))))))))..)))).))))))..)))).))
)).
SIMILARITIES| miRBase osa-MIR439i: 1e-18 PMRD osa-miRf10087-akr: 3e-44 microPC no hits | UniProt no hits RFAM MIR439: 2e-33 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
