ABOUT THIS RECORDspecies: Oryza sativa
source: PMRD, original name: osa-miRf11566-akr
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTCGAACTGCGTCAGTTCGACAGG miRNA* TGTCGAACAACCGCGGTTCGACAGG mismatches: 3 bulges: 0 |
pre-miRNA
ACCCTGTCGAACAACCGCGGTTCGACAGGGATATCTATCGAACAACCACAGTTCGACAGGTACATGTCGAACTGCGTCAGTTCGACAGGGT
dot-bracket secondary structure
((((((((((((...((((((((((((..(.(((((.((((((.......)))))).)))))).))))))))))))...))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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ACCCTGTCGAACAACCGCGGTTCGACAGGGATATCTATCGAACAACCACAGTTCGACAGGTACATGTCGAACTGCGTCAGTTCGACAGGGT
dot-bracket secondary structure
((((((((((((...((((((((((((..(.(((((.((((((.......)))))).)))))).))))))))))))...))))))))))))
SIMILARITIES| miRBase osa-MIR439i: 3e-44 PMRD osa-miRf11286-akr: 3e-44 microPC no hits | UniProt no hits RFAM MIR439: 2e-45 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
