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ABOUT THIS RECORD
ID:
MNEST050817
species:
Oryza sativa
source:
PMRD, original name:
osa-miRf11602-akr
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CCGGTGTTCTAGGACAGGAACTT
miRNA*
CTTCCTGGTAAGGAACACCAGAA
mismatches:
6
bulges:
0
View larger
pre-miRNA
ACCCGAAA
CTTCCTGGTAAGGAACACCAGAA
TTTCCGGTCTGCCATGTCCGGAACTT
CCGGTGTTCTAGGACAGGAACTT
CCGGGT
dot-bracket secondary structure
(((((.((
.((((((....((((((((.(((
.((((((.(......).)))))).))
).))))))))....)))))).))
.)))))
SIMILARITIES
miRBase
no hits
PMRD
osa-miRf11123-akr
:
5e-27
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record