ABOUT THIS RECORDspecies: Oryza sativa
source: PMRD, original name: osa-miRf11603-akr
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTACTCCCTCCGTCCCAAAATAAGT miRNA* TTATTTTGGGACGGAGAGAGTAGAT mismatches: 3 bulges: 0 |
pre-miRNA
GTTATCTACTCCCTCCGTCCCAAAATAAGTCAATCCCGTACTAGTATATGACACTTCCTAGTACGAGGTTGGTTTATTTTGGGACGGAGAGAGTAGATGA
C
dot-bracket secondary structure
(((((((((((.((((((((((((((((..(((((.((((((((.............)))))))).)))))..)))))))))))))))).))))))))))
)
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GTTATCTACTCCCTCCGTCCCAAAATAAGTCAATCCCGTACTAGTATATGACACTTCCTAGTACGAGGTTGGTTTATTTTGGGACGGAGAGAGTAGATGA
C
dot-bracket secondary structure
(((((((((((.((((((((((((((((..(((((.((((((((.............)))))))).)))))..)))))))))))))))).))))))))))
)
SIMILARITIES| miRBase osa-MIR1862c: 2e-45 PMRD osa-miRf11605-akr: 1e-52 microPC miR1862: 0.0000000003 | UniProt no hits RFAM MIR1122: 6e-49 |
Identical with: osa-miR1862c from PMRD (MNEST049154) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
