ABOUT THIS RECORDspecies: Oryza sativa
source: PMRD, original name: osa-miRf11612-akr
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCCCTCCGTCCCTAAATATA miRNA* TATTTAGGGACGGAGGGAGTA mismatches: 0 bulges: 0 |
pre-miRNA
TACTCCCTCCGTCCCTAAATATATAAGGGATTTTAGTGGGATGTAACACATCCTAGTATAATGAAGATATACTTCTATCCAGATTCGTCATACAAAAATC
ACTTATATTTAGGGACGGAGGGAGTA
dot-bracket secondary structure
(((((((((((((((((((((((..((.((((((..(((((((.....)))))))((((.(((((((((......))))....))))).)))).))))))
.)))))))))))))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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TACTCCCTCCGTCCCTAAATATATAAGGGATTTTAGTGGGATGTAACACATCCTAGTATAATGAAGATATACTTCTATCCAGATTCGTCATACAAAAATC
ACTTATATTTAGGGACGGAGGGAGTA
dot-bracket secondary structure
(((((((((((((((((((((((..((.((((((..(((((((.....)))))))((((.(((((((((......))))....))))).)))).))))))
.)))))))))))))))))))))))))
SIMILARITIES| miRBase osa-MIR818d: 0.0004 PMRD osa-miRf11352-akr: 0.0000000001 microPC miR1439: 0.0001 | UniProt no hits RFAM MIR1122: 4e-66 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
