ABOUT THIS RECORDspecies: Oryza sativa
source: PMRD, original name: osa-miRf11619-akr
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACCTACTCCCTCTGTCCCAAAAT miRNA* TTTGGGACTGAGGGAGTACGTCC mismatches: 4 bulges: 0 |
pre-miRNA
GGGACTACCTACTCCCTCTGTCCCAAAATAACTTAACCTGTGATCTATCCGAGGAGAACGAATCTTGACAAGCCTTTGTCCAGATTCGTCATTTTAGGAT
GGGCCACATTCCATTATTTTGGGACTGAGGGAGTACGTCCC
dot-bracket secondary structure
(((((....(((((((((.((((((((((((.......((((..((((((.((((..((((((((.(((((....))))).))))))))..)))).))))
))..)))).....)))))))))))).))))))))).)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GGGACTACCTACTCCCTCTGTCCCAAAATAACTTAACCTGTGATCTATCCGAGGAGAACGAATCTTGACAAGCCTTTGTCCAGATTCGTCATTTTAGGAT
GGGCCACATTCCATTATTTTGGGACTGAGGGAGTACGTCCC
dot-bracket secondary structure
(((((....(((((((((.((((((((((((.......((((..((((((.((((..((((((((.(((((....))))).))))))))..)))).))))
))..)))).....)))))))))))).))))))))).)))))
SIMILARITIES| miRBase osa-MIR1862d: 0.00003 PMRD osa-miRf11618-akr: 3e-76 microPC miR1439: 0.0004 | UniProt no hits RFAM MIR1122: 0.000008 |
Identical with: osa-miRf11618-akr from PMRD (MNEST050833) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
