ABOUT THIS RECORDspecies: Oryza sativa
source: PMRD, original name: osa-miRf11628-akr
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGACCCACATGTCAGCCTCAC miRNA* GAGGCTGACATGTGGGCCTGG mismatches: 1 bulges: 0 |
pre-miRNA
AATGCCATCCGGACCCACATGTCAGCCTCACTCTCCATTCAAACAAAAGTGATGCGGGACCCGATGATGAGTGAGGCTGACATGTGGGCCTGGGTGGCAT
T
dot-bracket secondary structure
((((((((((((.((((((((((((((((((((..((((....(...(....)...).....))))..)))))))))))))))))))).)))))))))))
)
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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AATGCCATCCGGACCCACATGTCAGCCTCACTCTCCATTCAAACAAAAGTGATGCGGGACCCGATGATGAGTGAGGCTGACATGTGGGCCTGGGTGGCAT
T
dot-bracket secondary structure
((((((((((((.((((((((((((((((((((..((((....(...(....)...).....))))..)))))))))))))))))))).)))))))))))
)
SIMILARITIES| miRBase osa-MIR1440: 2e-26 PMRD osa-miRf10751-akr: 1e-40 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
