ABOUT THIS RECORDspecies: Oryza sativa
source: PMRD, original name: osa-miRf11641-akr
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGAGCTTGGTCAAGCTCGA miRNA* GAGCTTGTATCGAGCTCGAGC mismatches: 0 bulges: 1 |
pre-miRNA
GTCGAGCTCGAGCTTGGTCAAGCTCGAGCCGAGCCTGTCAGAAAGCTTGAACATTTTATAGGCTCGGCTCGAGCTTGTATCGAGCTCGAGCCTAGGC
dot-bracket secondary structure
(((..(((((((((((((((((((((((((((((((((.((((.(......).)))))))))))))))))))))))).)))))))))))))...)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GTCGAGCTCGAGCTTGGTCAAGCTCGAGCCGAGCCTGTCAGAAAGCTTGAACATTTTATAGGCTCGGCTCGAGCTTGTATCGAGCTCGAGCCTAGGC
dot-bracket secondary structure
(((..(((((((((((((((((((((((((((((((((.((((.(......).)))))))))))))))))))))))).)))))))))))))...)))
SIMILARITIES| miRBase no hits PMRD osa-miRf12022-akr: 6e-27 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
