ABOUT THIS RECORDspecies: Oryza sativa
source: PMRD, original name: osa-miRf11657-akr
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCGCCAACCACTTTGGCGCTGAGGT miRNA* GTCAGCACCAAATACATTGGCGCTAA mismatches: 6 bulges: 0 |
pre-miRNA
GAGATGTCCAACGTCAGCACCAAATACATTGGCGCTAACATCTGGATGGGCTGAGGAGTAGCTTTGCCGCCTTGGCTAAGTCCAACCTTGGCGCCAACCA
CTTTGGCGCTGAGGTTGTACATCTC
dot-bracket secondary structure
(((((((.((((.(((((.(((((....((((((((((....(((((.(((..(((.(((....)))..)))..)))..)))))...))))))))))...
.))))).))))).)))).)))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
GAGATGTCCAACGTCAGCACCAAATACATTGGCGCTAACATCTGGATGGGCTGAGGAGTAGCTTTGCCGCCTTGGCTAAGTCCAACCTTGGCGCCAACCA
CTTTGGCGCTGAGGTTGTACATCTC
dot-bracket secondary structure
(((((((.((((.(((((.(((((....((((((((((....(((((.(((..(((.(((....)))..)))..)))..)))))...))))))))))...
.))))).))))).)))).)))))))
SIMILARITIES| miRBase no hits PMRD osa-miRf11362-akr: 0.000002 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
