ABOUT THIS RECORDspecies: Oryza sativa
source: PMRD, original name: osa-miRf11673-akr
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCCCGTCACCGATGACACTCATC miRNA* TAAGAGTCATCGATGACGGGCAT mismatches: 3 bulges: 0 |
pre-miRNA
GCCCGACGCCGATAAGAGTCATCGATGACGGGCATTCAGGCCATCTCAATCGGGCCTTCTTTGGAGCCCGTCACCGATGACACTCATCTATGACGGGC
dot-bracket secondary structure
(((((.((..(((.((.(((((((.((((((((.((((((((..........)))).....)))))))))))).))))))).)).)))..)).)))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GCCCGACGCCGATAAGAGTCATCGATGACGGGCATTCAGGCCATCTCAATCGGGCCTTCTTTGGAGCCCGTCACCGATGACACTCATCTATGACGGGC
dot-bracket secondary structure
(((((.((..(((.((.(((((((.((((((((.((((((((..........)))).....)))))))))))).))))))).)).)))..)).)))))
SIMILARITIES| miRBase osa-MIR817: 0.0003 PMRD osa-miRf11856-akr: 2e-20 microPC no hits | UniProt no hits RFAM MIR821: 0.000001 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
