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ABOUT THIS RECORD
ID:
MNEST051271
species:
Oryza sativa
source:
PMRD, original name:
osa-miRf12056-akr
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GCTGACATGTGGGCCCGAGTGGT
miRNA*
CACCCGGGCCCACATGTCAGCCT
mismatches:
1
bulges:
0
View larger
pre-miRNA
ATTCCCAAATGC
CACCCGGGCCCACATGTCAGCCT
CACTCTCCATTCAAACAAAAGTGATGCGGGACCCGATAATGAGTAAG
GCTGACATGTGGGCCCGA
GTGGT
ATTTGAGAAT
dot-bracket secondary structure
((((.(((((((
(((.(((((((((((((((((((
.((((..((((........))))...(((...))).....)))).))
))))))))))))))))).
)))))
))))).))))
SIMILARITIES
miRBase
osa-MIR1440
:
2e-27
PMRD
osa-miRf12058-akr
:
7e-55
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
osa-miRf12057-akr
from PMRD (
MNEST051272
)
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
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