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ABOUT THIS RECORD
ID:
MNEST051283
species:
Oryza sativa
source:
PMRD, original name:
osa-miRf12068-akr
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GCCACTTAAGCAGCCGTATG
miRNA*
TACGGCCACTTAAGTGGCCC
mismatches:
2
bulges:
0
View larger
pre-miRNA
TTTTCCCA
TACGGCCACTTAAGTGGCCC
GTATGGGAAAATCCTCTTAAGAGGTCCGCATGCAAAAATAAGGTCATTTTTTTGCATGCGGCTCACTTAAGC
GCCCGCATGGAAAAATCGATTTTTCCATACGA
GCCACTTAAGCAGCCGTATG
CGAAAA
dot-bracket secondary structure
.((((.((
((((((..((((((((((.(
(((((((((((((..((((((.(..(((((((((((((..........)))))))))))))..).)))))).
..((....)).......)))))))))))))).
))))))))))..))))))))
.)))).
SIMILARITIES
miRBase
osa-MIR1880
:
0.0001
PMRD
osa-miRf11562-akr
:
4e-20
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
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