ABOUT THIS RECORDspecies: Oryza sativa
source: PMRD, original name: osa-miRf12079-akr
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGTCCGCCTGCGAAGATAAT miRNA* AATCTTCGCAGGCGGGGCGGC mismatches: 2 bulges: 1 |
pre-miRNA
CGAAAAGAATCTTCGCAGGCGGGGCGGCTGTCCGCCTGTAAGCTAACGACTGTGAAGATCGCCGATCTTCGCAGGCGGGGCGGCCGTCCGCCTGCGAAGA
TAATTTTCG
dot-bracket secondary structure
((((((..(((((((((((((((.(((((((((((((((.(((....).))..(((((((...))))))))))))).)))))))))))))))))))))))
)..))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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CGAAAAGAATCTTCGCAGGCGGGGCGGCTGTCCGCCTGTAAGCTAACGACTGTGAAGATCGCCGATCTTCGCAGGCGGGGCGGCCGTCCGCCTGCGAAGA
TAATTTTCG
dot-bracket secondary structure
((((((..(((((((((((((((.(((((((((((((((.(((....).))..(((((((...))))))))))))).)))))))))))))))))))))))
)..))))))
SIMILARITIES| miRBase no hits PMRD osa-miRf11223-akr: 5e-43 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
