ABOUT THIS RECORDspecies: Oryza sativa
source: PMRD, original name: osa-miRf12082-akr
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACCAACCGGGACTAAAGATC miRNA* TCTTTAGTCCCGGTTGAAAA mismatches: 2 bulges: 0 |
pre-miRNA
CTAAAAATGATCTTTAGTCCCGGTTGAAAACCCAAGAGGCATTCTATGATTTTTAGTCCCAGTTGGTTCTTTAGTCTCGGTTCATCCCCTGTCAGATTGA
TGTCAGGGGGCCGAGGATCTTTAGTCTCGGTTGGTGTTACCAACCGGGACTAAAGATCACCACTTTAG
dot-bracket secondary structure
(((((..(((((((((((((((((((..((((((.(((((..............((..((....))..))....(((((((....((((((.((......
)).))))))))))))).......)))))...))).)))..)))))))))))))))))))....)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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CTAAAAATGATCTTTAGTCCCGGTTGAAAACCCAAGAGGCATTCTATGATTTTTAGTCCCAGTTGGTTCTTTAGTCTCGGTTCATCCCCTGTCAGATTGA
TGTCAGGGGGCCGAGGATCTTTAGTCTCGGTTGGTGTTACCAACCGGGACTAAAGATCACCACTTTAG
dot-bracket secondary structure
(((((..(((((((((((((((((((..((((((.(((((..............((..((....))..))....(((((((....((((((.((......
)).))))))))))))).......)))))...))).)))..)))))))))))))))))))....)))))
SIMILARITIES| miRBase no hits PMRD osa-miRf11964-akr: 3e-33 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
