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ABOUT THIS RECORD
ID:
MNEST051319
species:
Persea americana
miRNA family:
MIR157
source:
PMRD, original name:
pam-miR157
Taxonomy by NCBI:
Persea americana
Persea
Lauraceae
Laurales
magnoliids
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGACAGAAGAGAGAGAGCAC
miRNA*
GGCGCCCTTGAATGACAAGAGCTTGTCAAAGTCATGACAACGAAGAGTAGAGATGGTGCTTGGA
mismatches:
13
bulges:
104
View larger
pre-miRNA
TTGACAGAAGAGAGAGAGCAC
GCCGAATGTCCGGTGTTGCATCCAGGTTAGAAGTGATCATGGATGGCTTCTAGACCTTGATTGAGGACCCTCGGCAGT
G
GCGCCCTTGAATGACAAGAGCTTGTCAAAGTCATGACAACGAAGAGTAGAGATGGTGCTTGGA
AGCTCTACACCAGGCAGATGCAGATGCCCATCAATGC
CTTCTCCTCTCGTAGA
dot-bracket secondary structure
...........(((((..(((
(((((..((((........(((.(((((((((((.(((...))).)))))).))))).)))...))))..))))).))
)
..((.((((.....)))).)).(((((......)))))..((((.(((..((((((((((((.
.........)))))))...((....)))))))..)))
))))..))))).....
SIMILARITIES
miRBase
far-MIR529
:
0.0002
PMRD
tae-miR156b
:
0.00001
microPC
miR157
:
0.0002
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
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