ABOUT THIS RECORDspecies: Picea glauca
miRNA family: MIR160
source: PMRD, original name: pga-miR160
Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCTTACAAGGAGCCAAGCA mismatches: 4 bulges: 0 |
pre-miRNA
TGCCTGGCTCCCTGTATGCCACATACAAGGCCCAGTCATATGTTGATTGGCTTCATAGGTGGCTTACAAGGAGCCAAGCA
dot-bracket secondary structure
.((.(((((((.((((.(((((.((..(((((.(((((.....))))))))))..)).))))).)))).))))))).)).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGCCTGGCTCCCTGTATGCCACATACAAGGCCCAGTCATATGTTGATTGGCTTCATAGGTGGCTTACAAGGAGCCAAGCA
dot-bracket secondary structure
.((.(((((((.((((.(((((.((..(((((.(((((.....))))))))))..)).))))).)))).))))))).)).
SIMILARITIES| miRBase pab-MIR160a: 4e-40 PMRD zma-miR160m: 0.000004 microPC miR160: 4e-40 | UniProt no hits RFAM mir-160: 0.00007 |
Identical with: pab-MIR160a from miRBase (MNEST039374) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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