ABOUT THIS RECORDspecies: Picea glauca
miRNA family: MIR166
source: PMRD, original name: pga-miR166
Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCTT miRNA* TGATTTGAAGGCAGGCTGTTG mismatches: 7 bulges: 2 |
pre-miRNA
ATGATTTGAAGGCAGGCTGTTGAAGATTATCTCGGACCAGGCTTCATTCCTTGCATCCAAACTCTTTAAGTACT
dot-bracket secondary structure
..((..(((((.(.(((((..((......)).))).)).).))))).)).........................
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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ATGATTTGAAGGCAGGCTGTTGAAGATTATCTCGGACCAGGCTTCATTCCTTGCATCCAAACTCTTTAAGTACT
dot-bracket secondary structure
..((..(((((.(.(((((..((......)).))).)).).))))).)).........................
SIMILARITIES| miRBase pab-MIR166b: 1e-36 PMRD ptc-miR166o: 0.0000008 microPC miR166: 0.00001 | UniProt no hits RFAM mir-166: 0.0000002 |
Identical with: pab-MIR166b from miRBase (MNEST039377) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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