ABOUT THIS RECORDspecies: Populus trichocarpa x Populus deltoides
source: PMRD, original name: ppd-miR156
Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGAGAGCAC miRNA* GCTGGTTCACTTTCCATT mismatches: 5 bulges: 2 |
pre-miRNA
TGCTGGTTCACTTTCCATTCCAAGGGCATTATAGTTCAAGCTTGGGATCAAGGACTGAGCAGGAGAGTTCAGGTCTGGCTGCATCATGTCGCTCAAACCA
ATCTCCCGAGTCTCAGATGGTGGAGATGACAGAAGAGAGAGAGCAC
dot-bracket secondary structure
((((..(((.((((.(((((((.((((......))))..((((((((...((..((((((......))))))..)).((.((.....)).))........
...)))))))).........)))).)))...)))).)))..)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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TGCTGGTTCACTTTCCATTCCAAGGGCATTATAGTTCAAGCTTGGGATCAAGGACTGAGCAGGAGAGTTCAGGTCTGGCTGCATCATGTCGCTCAAACCA
ATCTCCCGAGTCTCAGATGGTGGAGATGACAGAAGAGAGAGAGCAC
dot-bracket secondary structure
((((..(((.((((.(((((((.((((......))))..((((((((...((..((((((......))))))..)).((.((.....)).))........
...)))))))).........)))).)))...)))).)))..)))).
SIMILARITIES| miRBase mtr-MIR156: 0.000002 PMRD stu-miR156b: 0.000002 microPC miR157: 0.0004 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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