ABOUT THIS RECORDspecies: Populus trichocarpa x Populus deltoides
source: PMRD, original name: ppd-miR163
Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGAAGAGGAGTTGGAACTTA miRNA* AGGAATGGCTCTTCTTATGGC mismatches: 7 bulges: 0 |
pre-miRNA
AAAGGAATGGCTCTTCTTATGGCGGAATTTGATAAGGTTAATAAGAAGCTTGGAGTTCGTAGGGAAGATCTACCAAAATATGAAGAGGAGTTGGAACTTA
dot-bracket secondary structure
.(((...(((((((((((...(((((......((((.((......)).))))...))))).((.........))........)))))))))))...))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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AAAGGAATGGCTCTTCTTATGGCGGAATTTGATAAGGTTAATAAGAAGCTTGGAGTTCGTAGGGAAGATCTACCAAAATATGAAGAGGAGTTGGAACTTA
dot-bracket secondary structure
.(((...(((((((((((...(((((......((((.((......)).))))...))))).((.........))........)))))))))))...))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q9SJ12|ATP7_ARATH: 0.00000005 RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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