ABOUT THIS RECORDspecies: Populus trichocarpa x Populus deltoides
miRNA family: MIR171
source: PMRD, original name: ppd-miR170
Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGCGCCAATATC miRNA* AGAGAGCTGGTGATTGAGCC mismatches: 12 bulges: 2 |
pre-miRNA
GAAGCCCACTGCCCACCATACCCAATATCAAAATCAACAACGTGAATTCTCTCAAACCCCTCAAAAGCCTCAAGAAGGGCTTGGTTACAAGTAAAATTTG
CAAACTGAAGGATCGGTGAGATCTCAGAGAAGGATTTATAAGCACCAATCTTGAAAATCGGGTTATAAGCAGTACCAATAGAGTTGTTATTGTTCATATT
GAGAAGTAATTGCAAGGCCTCCTTGAAGTAAAAAGCAGTCCTTTGATAAGGCTTACCGATTGGAACAGAGAGCTGGTGATTGAGCCGCGCCAATATC
dot-bracket secondary structure
.......(((((.......((((..................(..((((..((..((((......((((((......))))))))))...))...))))..
).......(((((.((((((((((.......)))))).....)))).))))).......)))).....))))).(((((...((.((((((.(((.....
))).)))))).)).((((((..(..(((............)))..)..))))))....)))))......(.((((((......)))).)))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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GAAGCCCACTGCCCACCATACCCAATATCAAAATCAACAACGTGAATTCTCTCAAACCCCTCAAAAGCCTCAAGAAGGGCTTGGTTACAAGTAAAATTTG
CAAACTGAAGGATCGGTGAGATCTCAGAGAAGGATTTATAAGCACCAATCTTGAAAATCGGGTTATAAGCAGTACCAATAGAGTTGTTATTGTTCATATT
GAGAAGTAATTGCAAGGCCTCCTTGAAGTAAAAAGCAGTCCTTTGATAAGGCTTACCGATTGGAACAGAGAGCTGGTGATTGAGCCGCGCCAATATC
dot-bracket secondary structure
.......(((((.......((((..................(..((((..((..((((......((((((......))))))))))...))...))))..
).......(((((.((((((((((.......)))))).....)))).))))).......)))).....))))).(((((...((.((((((.(((.....
))).)))))).)).((((((..(..(((............)))..)..))))))....)))))......(.((((((......)))).)))......
SIMILARITIES| miRBase bdi-MIR171a: 0.00000006 PMRD gma-miR171m: 2e-17 microPC miR171: 0.001 | UniProt sp|O81316|SCL6_ARATH: 1e-30 RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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