ABOUT THIS RECORDspecies: Populus trichocarpa x Populus deltoides
miRNA family: MIR172
source: PMRD, original name: ppd-miR172b
Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAATCTTGATGATGCTCCAC miRNA* GCAGCATCATCAAGATTCTCA mismatches: 3 bulges: 0 |
pre-miRNA
TATTGCCGATGCAGCATCATCAAGATTCTCACTTCCAAAGAACTTTGGCAGATGAACAGAAACAAAGAAAGATTTAACTCTTAACATCACCGGCCGTGCA
TTTGCATGTGAATCTTGATGATGCTCCACCCGCAAACAA
dot-bracket secondary structure
..((((.(.((.((((((((((((((((......(((((....)))))..((((...(((...(((......)))...)))...))))......(((((.
...))))).)))))))))))))))).)).).))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TATTGCCGATGCAGCATCATCAAGATTCTCACTTCCAAAGAACTTTGGCAGATGAACAGAAACAAAGAAAGATTTAACTCTTAACATCACCGGCCGTGCA
TTTGCATGTGAATCTTGATGATGCTCCACCCGCAAACAA
dot-bracket secondary structure
..((((.(.((.((((((((((((((((......(((((....)))))..((((...(((...(((......)))...)))...))))......(((((.
...))))).)))))))))))))))).)).).))))....
SIMILARITIES| miRBase ptc-MIR172b: 4e-75 PMRD ptc-miRf10081-akr: 4e-75 microPC miR172: 0.000002 | UniProt no hits RFAM mir-172: 7e-74 |
Identical with: ptc-miRf10081-akr from PMRD (MNEST051903) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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