ABOUT THIS RECORDspecies: Prunus persica
miRNA family: MIR408
source: PMRD, original name: ppe-miR408
Taxonomy by NCBI:
Prunus persica Prunus Amygdaleae Spiraeoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGCACTGCCTCTTCCCTGGC miRNA* CAGGGAACAGGTAGAGCATGG mismatches: 3 bulges: 0 |
pre-miRNA
ACTGATAAGACAGGGAACAGGTAGAGCATGGATGGAGTTCCCAACAGAAAAATAGAGCTGTTGTGGCTCTACTCATGCACTGCCTCTTCCCTGGCTGCCG
TCCTC
dot-bracket secondary structure
...(((.((.(((((((.((((((.(((((..(((((((..((((((..........)))))).)))))))..))))).)))))).))))))).))...)
))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ACTGATAAGACAGGGAACAGGTAGAGCATGGATGGAGTTCCCAACAGAAAAATAGAGCTGTTGTGGCTCTACTCATGCACTGCCTCTTCCCTGGCTGCCG
TCCTC
dot-bracket secondary structure
...(((.((.(((((((.((((((.(((((..(((((((..((((((..........)))))).)))))))..))))).)))))).))))))).))...)
))...
SIMILARITIES| miRBase ptc-MIR408: 0.0000000003 PMRD ptc-miR408: 0.0000000003 microPC miR408: 2e-45 | UniProt no hits RFAM MIR408: 0.0000000000004 |
Identical with: miR408 from microPC (MNEST046159) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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