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ABOUT THIS RECORD
ID:
MNEST051348
species:
Populus tremula x Populus tremuloides
miRNA family:
MIR164
source:
PMRD, original name:
ppl-miR164
Taxonomy by NCBI:
Populus tremula x Populus tremuloides
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGGAGAAGCAGGGCACGTGCA
miRNA*
CATGTGCCTGTCTTCCCCATC
mismatches:
5
bulges:
0
View larger
pre-miRNA
GTGAGCAAGA
TGGAGAAGCAGGGCACGTGCA
TTACTAACTCATGCATACAGAGTGAGAGAGACATTTCTTGCTCGAGTTATGACTCTTACCTACTATAGA
TTTTGTTGGCCTCAGTGAGTTAGTTCTT
CATGTGCCTGTCTTCCCCATC
ATGATCACTA
dot-bracket secondary structure
((((.((.((
(((.((((..(((((((((..
..((((((((((.(((((.(((..(((((....)))))..)))..).)))).......((.((......
....)).)).....))))))))))....
)))))))))..)))).)))))
.)).))))..
SIMILARITIES
miRBase
ptc-MIR164e
:
1e-72
PMRD
ptc-miRf11320-akr
:
5e-75
microPC
miR164
:
7e-74
UniProt
no hits
RFAM
MIR164: 1e-72
Identical with:
miR164
from microPC (
MNEST046101
)
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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