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ABOUT THIS RECORD

ID: MNEST051349
species: Populus tremula x Populus tremuloides
miRNA family: MIR167
source: PMRD, original name: ppl-miR167a

Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAAGCTGCCAGCATGATCTA

miRNA*
 GGTCATGCTCTGACAGCCTCACT

mismatches: 2
bulges: 2
View larger
pre-miRNA
 AGGGAAAAGGTGAAGCTGCCAGCATGATCTATCTTTGGTTAGAGAAGTATAGAAGCGAAGAACTAACCCTAGCTAGGTCATGCTCTGACAGCCTCACTCC
TTCCTGTT

dot-bracket secondary structure
.(((((..(((((.(((((.(((((((((((.((..((((((....((......))......))))))..)).)))))))))))..).)))).)))))..
)))))...


SIMILARITIES
miRBase ptc-MIR167d: 9e-48

PMRD ptc-miR167d: 9e-48

microPC miR167: 0.00000000009		UniProt no hits

RFAM MIR167_1: 4e-47

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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