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ABOUT THIS RECORD
ID:
MNEST051350
species:
Populus tremula x Populus tremuloides
miRNA family:
MIR167
source:
PMRD, original name:
ppl-miR167b
Taxonomy by NCBI:
Populus tremula x Populus tremuloides
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGAAGCTGCCAGCATGATCTG
miRNA*
GGTCATCTAGCAGCTTCAAT
mismatches:
1
bulges:
1
View larger
pre-miRNA
TTTGAGAGGT
TGAAGCTGCCAGCATGATCTG
GTAATGAACGTGTTACTCTCATTTATATATATATTAACATTAATCTTATAGCAGTATCTGTAGGTAGAA
AAAATTTAATGTTGTCAAAGATATATACTGAATCGTGGTTGCTAGGTTTGTATTACTAGTTTAGGATGCATGTTTTTGATCTTATGATGATCAATTGCTT
GTGAGTTCCTAGGCAATGAAAACAGAATATATACTGGTGATTTTTCCCAGTAAAATTGTCGAGAAAAGGGAATTGCACTAATAGGGAAGACGCATAGGTA
AACTTGTATCTAAATGGTATATGTATNTTCCAGGCAAAAGGGTAGAAACCTAATNAGAAACTAGCTTGAACTCAGAGCTATAAAAGTATATGGTTCCATC
A
GGTCATCTAGCAGCTTCAAT
CACTCACTCA
dot-bracket secondary structure
..((((.(((
(((((((((.((.((((((((
((.....................(((((((....(((((((((.(((((((......))))))).....
.....)))))))))......)))))))..((((((((.....(((((((.((((....((((((((.(((.((..((((((.......))))))..)).)
))....))))))))............(((((((((.(((..((((((((((..((((.((.......)).))))..)))....)))))))))).((((((
......))))))...)))))))))................)))).))))))).........((((((.......))))))........)))))))).)))
)
)))))))).)))))))))))
).))))....
SIMILARITIES
miRBase
gma-MIR167c
:
0.000000000002
PMRD
pts-miR167
:
0
microPC
miR167
:
0.00002
UniProt
no hits
RFAM
MIR167_1: 0
Identical with:
pts-miR167
from PMRD (
MNEST054373
)
MORE
miRNEST target predictions
non-miRNEST targets: none
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