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ABOUT THIS RECORD
ID:
MNEST051351
species:
Populus tremula x Populus tremuloides
source:
PMRD, original name:
ppl-miR319
Taxonomy by NCBI:
Populus tremula x Populus tremuloides
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGGACTGAAGGGAGCTCCT
miRNA*
AGAGCTTCCTTCAGCCCACTC
mismatches:
2
bulges:
1
View larger
pre-miRNA
AATGGTGGGAG
AGAGCTTCCTTCAGCCCACTC
ATGGATAGGAGAAAGGGATTGAATTAGCTGCCGACTCATTCATTCAAGCACTAGTAGAAAAAAGTGGA
ATGGATATTCTTTTGCTACTGTGATTGTGTGAATGATGCGGGAGATAGTTTTACATCCCCTCTTTTTCTGTGC
TTGGACTGAAGGGAGCTCCT
TCCTTCT
ATTG
dot-bracket secondary structure
(((((.(((((
.(((((((((((((.(((..(
(((((.(((((...(((((.((((((.((.(((..((((((((.(((.(((.(((((...(((..(((
((....)))))))).)))))))).))).))))))))..))).)).))))))...))))))))))..)))))).
.))).)))))))))))))))
)))..))
))).
SIMILARITIES
miRBase
ptc-MIR319f
:
3e-98
PMRD
ptc-miR319f
:
3e-98
microPC
miR319
:
2e-19
UniProt
no hits
RFAM
MIR159: 4e-98
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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